PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=a4Preproc
_pkgver=1.58.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Automated Affymetrix Array Analysis Preprocessing Package"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
  r-biobase
  r-biocgenerics
)
optdepends=(
  r-all
  r-hgu95av2.db
  r-knitr
  r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('2c56d3bd7d3290c917ecb611a3702ce8')
b2sums=('cb09cb30955cd0c6f3c91908ad8db8e96ffebe2de1fec330d3e7fb7d83495a9eecd2b44b3468908fbb18d8385b01c2ee3aeb71c0c9c8b150aa67b69aaf9ef141')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}