PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=a4Preproc
_pkgver=1.54.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Automated Affymetrix Array Analysis Preprocessing Package"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
  r-biobase
  r-biocgenerics
)
optdepends=(
  r-all
  r-hgu95av2.db
  r-knitr
  r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('b3655d08032f31ffc898cb0904221173')
b2sums=('97918387171fc091ea63f8e8ae43c2306feb2eb14b04291b7314ef881f0595778a051a5ed413ac4cf9a5f5a1cf3e78aa2922ab88ea932939c555771cc9e96160')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}