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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=affxparser
_pkgver=1.82.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Affymetrix File Parsing SDK"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('LGPL-2.0-or-later')
depends=(
r
)
optdepends=(
r-affymetrixdatatestfiles
r-r.oo
r-r.utils
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
"fix-makevars.patch")
md5sums=('9f748ecae1c1ed5c10113e2dbced634d'
'3003f5b61fc426c2f977e4cd277e9f44')
b2sums=('a30145868ef29aa1fdbb668ea93f16d6bfa0c6105d5d6b2df16e493c96c655c68c45db9a3d28433a74632dd78062f3cf27381d2596761407d38b2ac75b189ad7'
'263668f9ca395d380a7a2a2ed048cc33fd63418546fde998271504ab04fa2a8589d31a07de3f9470919455631fa77cb68bfdfa553164508bcf9c293a87d233e2')
prepare() {
# fix optimization level and race condition
patch -Np1 -i fix-makevars.patch
}
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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