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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=alabaster
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=2
pkgdesc="Umbrella for the Alabaster Framework"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-alabaster.base
r-alabaster.bumpy
r-alabaster.mae
r-alabaster.matrix
r-alabaster.ranges
r-alabaster.sce
r-alabaster.se
r-alabaster.spatial
r-alabaster.string
r-alabaster.vcf
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('359d26d34b8867dd418d0d277b0228c9')
b2sums=('82fa84924cb5e2432f2a2506c8eeb45c5e2853209a880fd658d5baffa2d41a4a7e2f5724636a021ad20abb767649d1aa1dd8fdd981ae8113060a1761a50c893b')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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