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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=alabaster
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Umbrella for the Alabaster Framework"
arch=(any)
url="https://bioconductor.org/packages/${_pkgname}"
license=(MIT)
depends=(
r-alabaster.base
r-alabaster.bumpy
r-alabaster.mae
r-alabaster.matrix
r-alabaster.ranges
r-alabaster.sce
r-alabaster.se
r-alabaster.spatial
r-alabaster.string
r-alabaster.vcf
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('359d26d34b8867dd418d0d277b0228c9')
sha256sums=('6d08f588c49200b514395245055d4628fabdd044aceabff0b4dd6b2e0b858050')
build() {
mkdir -p build
R CMD INSTALL "$_pkgname" -l build
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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