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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=alabaster.matrix
_pkgver=1.4.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Load and Save Artifacts from File"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-alabaster.base
r-biocgenerics
r-delayedarray
r-hdf5array
r-rcpp
r-rhdf5
r-s4arrays
r-s4vectors
r-sparsearray
)
checkdepends=(
r-biocsingular
r-chihaya
r-residualmatrix
r-testthat
)
optdepends=(
r-biocsingular
r-biocstyle
r-chihaya
r-knitr
r-residualmatrix
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('0bf0bc01bd3b0178d9db7221f88353d0')
b2sums=('648988e1825a4e004f75b18a8c5efb05da06d27897e257e36acf1577ee85ee5e0d81974afa1f354b6c4f0124c090282d4ff0db68cc627347e32d06412500285b')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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