blob: ac2e9f85d196e53c823fd183cc0345236865ab46 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=alpine
_pkgver=1.26.0
pkgname=r-${_pkgname,,}
pkgver=1.26.0
pkgrel=3
pkgdesc='alpine'
arch=('any')
url="https://bioconductor.org/packages/3.17/${_pkgname}"
license=('GPL')
depends=(
r
r-biostrings
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-graph
r-iranges
r-rbgl
r-rsamtools
r-s4vectors
r-speedglm
r-stringr
r-summarizedexperiment
)
optdepends=(
r-alpinedata
r-bsgenome.hsapiens.ncbi.grch38
r-ensembldb
r-knitr
r-markdown
r-rcolorbrewer
r-rtracklayer
r-testthat
)
source=("https://bioconductor.org/packages/3.17/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('6be1cbe591d858f1e70bf3bb64718c3b7f12bdd4561e28da71fdd66069aaa4d5')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|