blob: 12c72a0b67d69984fc9dda40ec5d086402142a1e (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
# Contributor: Nick B <Shirakawasuna at gmail _dot_com>
_pkgname=annotate
_pkgver=1.82.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Annotation for microarrays"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-annotationdbi
r-biobase
r-biocgenerics
r-dbi
r-httr
r-xml
r-xtable
)
checkdepends=(
r-org.hs.eg.db
r-runit
)
optdepends=(
r-biocstyle
r-biostrings
r-genefilter
r-go.db
r-hgu95av2.db
r-humanchrloc
r-iranges
r-knitr
r-org.hs.eg.db
r-org.mm.eg.db
r-rae230a.db
r-rae230aprobe
r-rgraphviz
r-runit
r-tkwidgets
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('3360e99f514042ac90eae8ff68e77e47')
b2sums=('34dfc32b111da2f801f2e1867d9c62488be3fa6da7e0c2e1a7df05e617b9f113ee333061f291cb601906e1a75b6d3b5a8cc947fc9d43d4423a751e813f38a1a7')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" Rscript --vanilla annotate_unit_tests.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|