blob: 872c9fa9d02659a1ab270771b516ced886ff8163 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=AnnotationHub
_pkgver=3.8.0
pkgname=r-${_pkgname,,}
pkgver=3.8.0
pkgrel=1
pkgdesc='Client to access AnnotationHub resources'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-annotationdbi
r-biocfilecache
r-biocgenerics
r-biocmanager
r-biocversion
r-curl
r-dplyr
r-httr
r-interactivedisplaybase
r-rappdirs
r-rsqlite
r-s4vectors
r-yaml
)
optdepends=(
r-annotationforge
r-annotationhubdata
r-biocstyle
r-biostrings
r-experimenthub
r-gdsfmt
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-hubpub
r-iranges
r-knitr
r-msnbase
r-mzr
r-rbiopaxparser
r-rmarkdown
r-rsamtools
r-rtracklayer
r-runit
r-summarizedexperiment
r-variantannotation
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('608ff3fdfbd3776b96a2c565b4ee2424515d28140c04b466be7081208bc42866')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|