PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=annotationTools
_pkgver=1.78.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Annotate microarrays and perform cross-species gene expression analyses using flat file databases"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-or-later')
depends=(
  r-biobase
)
optdepends=(
  r-biocstyle
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('be285a6910e43e06c34d4abe65ba121d')
b2sums=('b50339aa8eb18a75d1c0f0e80665b0b71ed115fbd4c34eaa013cc5bd68a30ce326d81a004ecbf8229f6110ee8a8d6a6d1e4fa0847ebf958b4ad9fd0bb372a184')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}