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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=annotatr
_pkgver=1.32.0
pkgname=r-${_pkgname,,}
pkgver=1.32.0
pkgrel=1
pkgdesc='Annotation of Genomic Regions to Genomic Annotations'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-annotationdbi
r-annotationhub
r-dplyr
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-ggplot2
r-iranges
r-readr
r-regioner
r-reshape2
r-rtracklayer
r-s4vectors
)
optdepends=(
r-biocstyle
r-devtools
r-knitr
r-org.dm.eg.db
r-org.gg.eg.db
r-org.hs.eg.db
r-org.mm.eg.db
r-org.rn.eg.db
r-rmarkdown
r-roxygen2
r-testthat
r-txdb.dmelanogaster.ucsc.dm3.ensgene
r-txdb.dmelanogaster.ucsc.dm6.ensgene
r-txdb.ggallus.ucsc.galgal5.refgene
r-txdb.hsapiens.ucsc.hg19.knowngene
r-txdb.hsapiens.ucsc.hg38.knowngene
r-txdb.mmusculus.ucsc.mm10.knowngene
r-txdb.mmusculus.ucsc.mm9.knowngene
r-txdb.rnorvegicus.ucsc.rn4.ensgene
r-txdb.rnorvegicus.ucsc.rn5.refgene
r-txdb.rnorvegicus.ucsc.rn6.refgene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('5aefcf093d4f6d9babdad08ffcdf59efe97cfee318af6a68b360910aeb184686')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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