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# system requirements: C++11
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=BayesSpace
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=1.12.0
pkgrel=1
pkgdesc='Clustering and Resolution Enhancement of Spatial Transcriptomes'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-assertthat
r-biocfilecache
r-biocsingular
r-coda
r-dirichletreg
r-ggplot2
r-mclust
r-purrr
r-rcpp
r-rcpparmadillo
r-rcppdist
r-rcppprogress
r-rcurl
r-rhdf5
r-s4vectors
r-scales
r-scater
r-scran
r-singlecellexperiment
r-summarizedexperiment
r-xgboost
gcc
)
optdepends=(
r-dplyr
r-igraph
r-knitr
r-patchwork
r-rcolorbrewer
r-rmarkdown
r-seurat
r-spatiallibd
r-testthat
r-viridis
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('0584268335dad3b79815c1a85201167585b1258cff171bd949c1ed6ca9d70fd7')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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