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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=benchdamic
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=1.4.0
pkgrel=1
pkgdesc='Benchmark of differential abundance methods on microbiome data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-aldex2
r-ancombc
r-biocparallel
r-corncob
r-cowplot
r-dearseq
r-deseq2
r-edger
r-ggdendro
r-ggplot2
r-ggridges
r-limma
r-mast
r-metagenomeseq
r-mglm
r-noiseq
r-phyloseq
r-plyr
r-rcolorbrewer
r-reshape2
r-seurat
r-summarizedexperiment
r-tidytext
r-treesummarizedexperiment
r-zinbwave
)
optdepends=(
r-biocstyle
r-kableextra
r-knitr
r-rmarkdown
r-spsimseq
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('38b32d647d47f5eaae9fb87bbe7ed0fdaf12a887245543b797a32dd9fbb299b8')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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