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# Maintainer: peippo <christoph+aur@christophfink.com>
# Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
# Contributor: Grey Christoforo <first name at last name dot net>
_bcname=BiocParallel
_bcver=1.36.0
pkgname=r-${_bcname,,}
pkgdesc="Bioconductor facilities for parallel evaluation"
url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
pkgver=${_bcver//[:-]/.}
pkgrel=1
arch=("i686" "x86_64")
license=("GPL2" "GPL3")
depends=(
"r>=3.5.0"
"r-bh"
"r-codetools"
"r-cpp11"
"r-futile.logger"
"r-snow"
)
optdepends=(
"r-batchtools"
"r-bbmisc"
"r-biocgenerics"
"r-biocstyle"
"r-data.table"
"r-doparallel"
"r-foreach"
"r-genomicalignments"
"r-genomicranges"
"r-knitr"
"r-rnaseqdata.hnrnpc.bam.chr14"
"r-rsamtools"
"r-runit"
"r-shortread"
"r-txdb.hsapiens.ucsc.hg19.knowngene"
"r-variantannotation"
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
b2sums=('40c18ff52c75ff0626b3d6a7ed39a495c907b76d10833a7f4b84c3f6d0a0a7eee507741c609fd9be8d5c3e4c6dc92008a96c90184884840786462b8f2e60bb49')
build() {
R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library"
if [[ -f "${_bcname}/LICENSE" ]]; then
install -Dm0644 "${_bcname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
fi
}
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