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# Maintainer: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
# Contributor: Grey Christoforo <first name at last name dot net>
_bcname=BiocParallel
_bcver=1.20.1
pkgname=r-biocparallel
pkgver=${_bcver//[:-]/.}
pkgrel=1
pkgdesc="Bioconductor facilities for parallel evaluation"
url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
arch=(i686 x86_64)
license=('GPL2' 'GPL3')
depends=('r' 'r-futile.logger' 'r-snow' 'r-bh')
makedepends=('gcc>=4.3')
optdepends=('r-biocgenerics' 'r-foreach' 'r-batchjobs' 'r-bbmisc' 'r-doparallel' 'r-rmpi' 'r-genomicranges' 'r-rnaseqdata.hnrnpc.bam.chr14' 'r-txdb.hsapiens.ucsc.hg19.knowngene' 'r-variantannotation' 'r-rsamtools' 'r-genomicalignments' 'r-shortread' 'r-codetools' 'r-runit' 'r-biocstyle' 'r-knitr' 'r-batchtools' 'r-data.table')
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
sha1sums=('99be1cf32bb153b958c6af5834e89f541b23876d')
build(){
cd "${srcdir}"
R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l $srcdir
}
package() {
cd "${srcdir}"
install -dm0755 "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "$_bcname" "$pkgdir/usr/lib/R/library"
}
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