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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=BioNAR
_pkgver=1.4.4
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Biological Network Analysis in R"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-annotationdbi
r-clustercons
r-cowplot
r-data.table
r-dplyr
r-fgsea
r-ggplot2
r-ggrepel
r-go.db
r-igraph
r-latex2exp
r-minpack.lm
r-org.hs.eg.db
r-powerlaw
r-rdpack
r-rspectra
r-rspectral
r-scales
r-stringr
r-viridis
r-wgcna
)
checkdepends=(
r-igraphdata
r-testthat
r-vdiffr
)
optdepends=(
r-biocstyle
r-devtools
r-igraphdata
r-knitr
r-magick
r-pander
r-plotly
r-randomcolor
r-rmarkdown
r-testthat
r-vdiffr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
"fix-tests.patch")
md5sums=('60ea801489d5db3a2bb2e00d1acc1056'
'4a0d1366b4a7d786d07d1553c9a7899e')
b2sums=('9a2a1a98ccff8e9d8054295f5b53321dcd03f9d996a1931f4e6a51c98af378ac2d0e0ef9a1ff51e43b15ff795ac523305037197d6b0e63ddd2f4aeeb28f6ff34'
'5bcc25f82c45ce8442351f73a851f34bf2c76b286dd708141882f928876d02fba213e8760146cd3115d298985aa062fb67d9a5d89ea7a62687d65fdfb3349a84')
prepare() {
# fix test snapshots
patch -Np1 -i fix-tests.patch
}
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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