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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=BSgenomeForge
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Forge BSgenome data packages"
arch=(any)
url="https://bioconductor.org/packages/${_pkgname}"
license=(Artistic2.0)
depends=(
r-biobase
r-biocgenerics
r-biostrings
r-bsgenome
r-genomeinfodb
r-iranges
r-rtracklayer
r-s4vectors
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-devtools
r-genomicfeatures
r-genomicranges
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('ed03f4628533403765aae28991855bca')
sha256sums=('fa0fc3076e4e7f769d3295aba9735a10f8cac62d2f504ee44a0a1a19cb2ebafc')
build() {
mkdir -p build
R CMD INSTALL "$_pkgname" -l build
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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