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# system requirements: C++11
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=bsseq
_pkgver=1.38.0
pkgname=r-${_pkgname,,}
pkgver=1.38.0
pkgrel=1
pkgdesc='Analyze, manage and store bisulfite sequencing data'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-beachmat
r-biobase
r-biocgenerics
r-biocparallel
r-biostrings
r-bsgenome
r-data.table
r-delayedarray
r-delayedmatrixstats
r-genomeinfodb
r-genomicranges
r-gtools
r-hdf5array
r-iranges
r-limma
r-locfit
r-permute
r-r.utils
r-rcpp
r-rhdf5
r-s4vectors
r-scales
r-summarizedexperiment
gcc
)
optdepends=(
r-batchtools
r-beachmat
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg38
r-bsseqdata
r-doparallel
r-knitr
r-matrix
r-rmarkdown
r-rtracklayer
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('e0bdc6810757910674d493238d78f5079d048c718deb94df594ab82a4afed729')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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