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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=bulkAnalyseR
_pkgver=1.1.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Interactive Shiny App for Bulk Sequencing Data"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=('GPL-2.0-only')
depends=(
r-circlize
r-complexheatmap
r-deseq2
r-dplyr
r-dt
r-edger
r-genie3
r-ggforce
r-ggnewscale
r-ggplot2
r-ggrastr
r-ggrepel
r-ggvenndiagram
r-glue
r-gprofiler2
r-magrittr
r-matrixstats
r-noisyr
r-preprocesscore
r-rcolorbrewer
r-rlang
r-scales
r-shiny
r-shinyjqui
r-shinyjs
r-shinylp
r-shinywidgets
r-stringr
r-tibble
r-tidyr
r-upsetr
r-visnetwork
)
optdepends=(
r-annotationdbi
r-biocmanager
r-knitr
r-org.hs.eg.db
r-org.mm.eg.db
r-readxl
r-rmarkdown
r-shinythemes
r-testthat
)
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('4237529b6f084018e02b8bdf247d92cb')
b2sums=('b5f52965ca42b0a5763e897253503f8a8b495d1072169d4ea48dab89ed72032b1f58e6be375ab3d731a7eb2a68dc5e8bc740acefbffeb66800d0460316a1d355')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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