blob: 50acf8dbc2e773cb149e160cef3e827d4cbabf09 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
|
# system requirements: GNU make
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=BUSpaRse
_pkgver=1.14.1
pkgname=r-${_pkgname,,}
pkgver=1.14.1
pkgrel=1
pkgdesc='kallisto | bustools R utilities'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('BSD')
depends=(
r
r-annotationdbi
r-annotationfilter
r-bh
r-biocgenerics
r-biomart
r-biostrings
r-bsgenome
r-dplyr
r-ensembldb
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-ggplot2
r-iranges
r-magrittr
r-plyranges
r-rcpp
r-rcpparmadillo
r-rcppprogress
r-s4vectors
r-stringr
r-tibble
r-tidyr
r-zeallot
make
)
optdepends=(
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg38
r-ensdb.hsapiens.v86
r-knitr
r-rmarkdown
r-tenxbusdata
r-testthat
r-txdb.hsapiens.ucsc.hg38.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ee8174afe13d61a5755568cd3f5e354450ac109e321bb5040db8cc35dcfaad8a')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
|