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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=CAGEr
_pkgver=2.10.0
pkgname=r-${_pkgname,,}
pkgver=2.10.0
pkgrel=1
pkgdesc='Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biocgenerics
r-biocparallel
r-bsgenome
r-cagefightr
r-data.table
r-delayedarray
r-delayedmatrixstats
r-formula.tools
r-genomeinfodb
r-genomicalignments
r-genomicranges
r-ggplot2
r-gtools
r-iranges
r-memoise
r-multiassayexperiment
r-plyr
r-reshape2
r-rsamtools
r-rtracklayer
r-s4vectors
r-som
r-stringdist
r-stringi
r-summarizedexperiment
r-vegan
r-vgam
)
optdepends=(
r-biocstyle
r-bsgenome.drerio.ucsc.danrer7
r-deseq2
r-fantom3and4cage
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('e4668be44971a95d4845de2bd29bea05b1d544e529577969650cede00b3dbdaa')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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