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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=CBEA
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Competitive Balances for Taxonomic Enrichment Analysis in R"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-biocparallel
r-biocset
r-dplyr
r-fitdistrplus
r-generics
r-glue
r-goftest
r-lmom
r-magrittr
r-mixtools
r-rcpp
r-rlang
r-summarizedexperiment
r-tibble
r-tidyr
r-treesummarizedexperiment
)
checkdepends=(
r-mia
r-purrr
r-testthat
)
optdepends=(
r-biocstyle
r-covr
r-knitr
r-mia
r-phyloseq
r-purrr
r-refmanager
r-rmarkdown
r-roxygen2
r-sessioninfo
r-testthat
r-tidyverse
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('cb3328be7ed8c0a54c318bf4b90381e6')
b2sums=('6b2cb1e6b824e94ff1e9bae0ce814761ef7887610c583119c6b3641939325a55ac56487a15af8bf04a8a95ab4be1bc505ef3e033eba3636013df1e3eff58b4d2')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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