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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=ccImpute
_pkgver=1.14.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="an accurate and scalable consensus clustering based approach to impute dropout events in the single-cell RNA-seq data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
blas
r-biocparallel
r-irlba
r-rcpp
r-singlecellexperiment
r-sparsematrixstats
r-summarizedexperiment
)
makedepends=(
r-rcppeigen
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-mclust
r-rmarkdown
r-scater
r-scrnaseq
r-sessioninfo
r-splatter
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('f88ac67b403661032fc9659f5063a315')
b2sums=('913f59579b6e3b6cf210eb39249fd3459f132e85b2424a34056217f66464d57589af4d5559c339db304eb11c134979e97d73316e7e32770518943be6357a021d')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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