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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=cfdnakit
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Fragmen-length analysis package from high-throughput sequencing of cell-free DNA (cfDNA)"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biobase
r-dplyr
r-genomeinfodb
r-genomicranges
r-ggplot2
r-iranges
r-magrittr
r-pscbs
r-qdnaseq
r-rlang
r-rsamtools
r-s4vectors
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-roxygen2
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('b84860776e53665c77040c606cdb5db7')
b2sums=('9ad50008c2f884c6470929d6c3bc6fa5b9a38f6fd21290de533836b1e2c4e1bdb8d500df00f4249213d9fe135e4e93ab9073c14c500e5b2a907c38c7c42eeefd')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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