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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=cfDNAPro
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=1.8.0
pkgrel=1
pkgdesc='cfDNAPro Helps Characterise and Visualise Whole Genome Sequencing Data from Liquid Biopsy'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biocgenerics
r-bsgenome.hsapiens.ncbi.grch38
r-bsgenome.hsapiens.ucsc.hg19
r-bsgenome.hsapiens.ucsc.hg38
r-dplyr
r-genomeinfodb
r-genomicalignments
r-genomicranges
r-ggplot2
r-iranges
r-magrittr
r-plyranges
r-quantmod
r-rlang
r-rsamtools
r-stringr
r-tibble
)
optdepends=(
r-biocstyle
r-devtools
r-ggpubr
r-knitr
r-rmarkdown
r-scales
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('f2cf246b77c6607d11745534b671759a17cd58720dc5a2986dfac7b43f64187f')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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