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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
# Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
_pkgname=CGEN
_pkgver=3.34.0
pkgname=r-${_pkgname,,}
pkgver=3.34.0
pkgrel=1
pkgdesc="An R package for analysis of case-control studies in genetic epidemiology"
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
'r>=4.0'
r-mvtnorm
)
makedepends=(
gcc-fortran
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
"fix_globals.patch")
sha256sums=('67a5bbff5c7b8284aee205b62cdbf7fff8e64c79ea490b0ac5c916b9e95c754e'
'a1e9baa3c89b9950209e4832c35856ccb6b660fedb9ddf9c72c2ed0bc552c752')
#prepare() {
# cd "${srcdir}/${_pkgname}"
# fix global variables overlap until it will be fixed in upstream
# patch -Np0 -i "${srcdir}/fix_globals.patch"
#}
build() {
# create staging directory for installation
mkdir -p "${srcdir}/staged"
R CMD INSTALL "${_pkgname}" -l "${srcdir}/staged"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${srcdir}/staged/${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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