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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ChemmineOB
_pkgver=1.40.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="R interface to a subset of OpenBabel functionalities"
arch=(x86_64)
url="https://bioconductor.org/packages/${_pkgname}"
license=(Artistic2.0 GPL3)
depends=(
openbabel
r-biocgenerics
r-rcpp
r-zlibbioc
)
makedepends=(
eigen
r-bh
)
checkdepends=(
r-chemminer
r-runit
)
optdepends=(
r-biocmanager
r-biocstyle
r-chemminer
r-knitr
r-knitrbootstrap
r-rmarkdown
r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('5bd759ca398ffb70214a8076028bf0b2')
sha256sums=('b147d9e00df464d13b1c6d876b0a49e158510ff725da599e51b936faf997ca55')
build() {
mkdir -p build
R CMD INSTALL "$_pkgname" -l build
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" Rscript --vanilla runTests.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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