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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ChromSCape
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=1.10.0
pkgrel=1
pkgdesc='Analysis of single-cell epigenomics datasets with a Shiny App'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-batchelor
r-biocparallel
r-colorramps
r-colourpicker
r-consensusclusterplus
r-coop
r-delayedarray
r-dplyr
r-dt
r-edger
r-forcats
r-fs
r-genomicranges
r-gggenes
r-ggplot2
r-ggrepel
r-gridextra
r-iranges
r-irlba
r-jsonlite
r-kableextra
r-matrixtests
r-msigdbr
r-plotly
r-qs
r-qualv
r-rcpp
r-rlist
r-rsamtools
r-rtracklayer
r-rtsne
r-s4vectors
r-scater
r-scran
r-shiny
r-shinycssloaders
r-shinydashboard
r-shinydashboardplus
r-shinyfiles
r-shinyhelper
r-shinyjs
r-shinywidgets
r-singlecellexperiment
r-stringdist
r-stringr
r-summarizedexperiment
r-tibble
r-tidyr
r-umap
r-viridis
)
optdepends=(
r-biocstyle
r-bluster
r-future
r-httr
r-igraph
r-knitr
r-markdown
r-rmarkdown
r-signac
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('bb53239d257688b87eb3b28c01812b49f07fd21784e4f62e97202efd41f5afec')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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