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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=CNEr
_pkgver=1.36.0
pkgname=r-${_pkgname,,}
pkgver=1.36.0
pkgrel=1
pkgdesc='CNE Detection and Visualization'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-annotate
r-biocgenerics
r-biostrings
r-dbi
r-genomeinfodb
r-genomicalignments
r-genomicranges
r-ggplot2
r-go.db
r-iranges
r-keggrest
r-powerlaw
r-r.utils
r-readr
r-reshape2
r-rsqlite
r-rtracklayer
r-s4vectors
r-xvector
)
optdepends=(
r-biocstyle
r-bsgenome.drerio.ucsc.danrer10
r-bsgenome.ggallus.ucsc.galgal3
r-bsgenome.hsapiens.ucsc.hg19
r-bsgenome.hsapiens.ucsc.hg38
r-gviz
r-knitr
r-rmarkdown
r-testthat
r-txdb.drerio.ucsc.danrer10.refgene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('cd493d039a1042dc0e0dd2db90ddb796d57bd59706ea0ebc87e1782532735911')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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