blob: 58ed2197a14c8246b3629252770ca9cd32958609 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=CNVMetrics
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=3
pkgdesc="Copy Number Variant Metrics"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-biocparallel
r-genomicranges
r-gridextra
r-iranges
r-magrittr
r-pheatmap
r-rbeta2009
r-s4vectors
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('ebb4f847744aaddcc125d870b1a67154')
b2sums=('e6a350c3fd5685ea76a3856bc0e2c199aec668c716d3ea5bb483050d198e894d85b1b7fe8e93ea79b65934403eec9b27dcf53087511d91b11638e136d660f844')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|