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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=CODEX
_pkgver=1.36.0
pkgname=r-${_pkgname,,}
pkgver=1.36.0
pkgrel=1
pkgdesc='A Normalization and Copy Number Variation Detection Method for Whole Exome Sequencing'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biostrings
r-bsgenome.hsapiens.ucsc.hg19
r-genomeinfodb
r-iranges
r-rsamtools
r-s4vectors
)
optdepends=(
r-wes.1kg.wugsc
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('5f35ce48e2535a2299e2f9d17fffe5d336f1491f17bad3c8a70c9310313c6d5c')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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