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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=compEpiTools
_pkgver=1.38.0
pkgname=r-${_pkgname,,}
pkgver=1.38.0
pkgrel=1
pkgdesc='Tools for computational epigenomics'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-annotationdbi
r-biocgenerics
r-biostrings
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-go.db
r-gplots
r-iranges
r-methylpipe
r-rsamtools
r-s4vectors
r-topgo
r-xvector
)
optdepends=(
r-bsgenome.mmusculus.ucsc.mm9
r-knitr
r-org.mm.eg.db
r-rtracklayer
r-txdb.mmusculus.ucsc.mm9.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('58acce986f19383b714630ff242c5a3900343f636590924230baf0af6174d013')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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