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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=conos
_pkgver=1.5.2
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Clustering on Network of Samples"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=('GPL-3.0-only')
depends=(
blas
lapack
r-abind
r-complexheatmap
r-cowplot
r-dendextend
r-dplyr
r-ggplot2
r-ggrepel
r-gridextra
r-igraph
r-irlba
r-leidenalg
r-magrittr
r-n2r
r-r6
r-reshape2
r-rlang
r-rtsne
r-sccore
)
makedepends=(
r-rcpp
r-rcpparmadillo
r-rcppeigen
r-rcppprogress
)
optdepends=(
r-annotationdbi
r-biocparallel
r-conospanel
r-deseq2
r-drat
r-entropy
r-ggrastr
r-go.db
r-jsonlite
r-knitr
r-org.hs.eg.db
r-org.mm.eg.db
r-p2data
r-pagoda2
r-plyr
r-pma
r-rhdf5
r-rmarkdown
r-rmumps
r-seurat
r-shinycssloaders
r-summarizedexperiment
r-testthat
r-tibble
r-uwot
r-zoo
)
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('ebbd6a030dabdbcff607dee0bd937081')
b2sums=('a75b7e6a25e3f41feb1884d6bf266c7f8feeefb458b27c6adb5195e029f11b32172bdff694a7a081a3309ba920b71d46468d14d93b770ca6dee05a12c7a3ff56')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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