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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=conumee
_pkgver=1.42.0
pkgname=r-${_pkgname,,}
pkgver=1.42.0
pkgrel=1
pkgdesc='Enhanced copy-number variation analysis using Illumina DNA methylation arrays'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-dnacopy
r-genomeinfodb
r-genomicranges
r-illuminahumanmethylation450kanno.ilmn12.hg19
r-illuminahumanmethylation450kmanifest
r-illuminahumanmethylationepicanno.ilm10b2.hg19
r-illuminahumanmethylationepicmanifest
r-iranges
r-minfi
r-rtracklayer
)
optdepends=(
r-biocstyle
r-knitr
r-minfidata
r-rcurl
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('a6f5e2177635f37118a3be2d79bb536f507e56308de27c4b4af30d78ada4189f')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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