blob: e2513042cc450cca9cce8bc070b523eda1d6ff8f (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=conumee
_pkgver=1.46.0
pkgname=r-${_pkgname,,}
pkgver=1.46.0
pkgrel=1
pkgdesc='Enhanced copy-number variation analysis using Illumina DNA methylation arrays'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-dnacopy
r-genomeinfodb
r-genomicranges
r-illuminahumanmethylation450kanno.ilmn12.hg19
r-illuminahumanmethylation450kmanifest
r-illuminahumanmethylationepicanno.ilm10b2.hg19
r-illuminahumanmethylationepicmanifest
r-iranges
r-minfi
r-rtracklayer
)
optdepends=(
r-biocstyle
r-knitr
r-minfidata
r-rcurl
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('babdff69990ecb7ce1f0043d8d28b5a0026a192dd4541fcc40400ed5229259e6')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|