PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=crlmm
_pkgver=1.64.0
pkgname=r-${_pkgname,,}
pkgver=1.64.0
pkgrel=1
pkgdesc='Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
  r
  r-affyio
  r-beanplot
  r-biobase
  r-biocgenerics
  r-ellipse
  r-ff
  r-foreach
  r-illuminaio
  r-limma
  r-matrixstats
  r-mvtnorm
  r-oligoclasses
  r-preprocesscore
  r-rcppeigen
  r-vgam
)
optdepends=(
  r-genomewidesnp6crlmm
  r-hapmapsnp6
  r-runit
  r-snpstats
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('a541b3cb03829e7bf9af5dc59c20b355f585b46be63155bc06269e79ec3b8839')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: