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# system requirements: C++11, GNU make
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=csaw
_pkgver=1.30.1
pkgname=r-${_pkgname,,}
pkgver=1.30.1
pkgrel=3
pkgdesc='ChIP-Seq Analysis with Windows'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biocgenerics
r-biocparallel
r-edger
r-genomeinfodb
r-genomicranges
r-iranges
r-limma
r-metapod
r-rcpp
r-rhtslib
r-rsamtools
r-s4vectors
r-summarizedexperiment
r-zlibbioc
gcc
make
)
optdepends=(
r-annotationdbi
r-biocmanager
r-biocstyle
r-genomicalignments
r-genomicfeatures
r-knitr
r-org.mm.eg.db
r-rmarkdown
r-testthat
r-txdb.mmusculus.ucsc.mm10.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('a38512cc4db8865a70623d60db29e4d4f05c476c6a0de776110cbc50c4cbde89')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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