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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=DELocal
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Identifies differentially expressed genes with respect to other local genes"
arch=(any)
url="https://bioconductor.org/packages/${_pkgname}"
license=(MIT)
depends=(
r-deseq2
r-dplyr
r-ggplot2
r-limma
r-matrixstats
r-reshape2
r-summarizedexperiment
)
optdepends=(
r-biocstyle
r-biomart
r-knitr
r-pcredux
r-rmarkdown
r-stringr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('40f2eac89260ff4692fb02047990d048')
sha256sums=('07efaf2566a44e8a92c54523ed816c8ffdca978d5dcc20da3c6bdd38167ef0c1')
build() {
mkdir -p build
R CMD INSTALL "$_pkgname" -l build
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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