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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=DGEobj.utils
_pkgver=1.0.6
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=3
pkgdesc="Differential Gene Expression (DGE) Analysis Utility Toolkit"
arch=(any)
url="https://cran.r-project.org/package=$_pkgname"
license=('GPL-3.0-only')
depends=(
r-assertthat
r-dgeobj
r-dplyr
r-stringr
)
checkdepends=(
r-biomart
r-canvasxpress
r-edger
r-ggplot2
r-ihw
r-limma
r-qvalue
r-rnaseqpower
r-statmod
r-sva
r-testthat
r-zfpkm
)
optdepends=(
r-biomart
r-canvasxpress
r-conflicted
r-edger
r-ggplot2
r-glue
r-ihw
r-knitr
r-limma
r-qvalue
r-rmarkdown
r-rnaseqpower
r-statmod
r-sva
r-testthat
r-zfpkm
)
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('8acaeb2945ce80bd2f83f88ef365c88f')
b2sums=('6e4b053a97206f595bc13933603b3976d5fccaf1c87211d29ac3ebbb34a58cc6a8d5cdc422d593779d8233c78c98cc33dee5a71db53c946bf33abcc0a54e993a')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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