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# system requirements: GNU make
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=DiffBind
_pkgver=3.6.4
pkgname=r-${_pkgname,,}
pkgver=3.6.4
pkgrel=1
pkgdesc='Differential Binding Analysis of ChIP-Seq Peak Data'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-amap
r-apeglm
r-ashr
r-biocparallel
r-deseq2
r-dplyr
r-genomicalignments
r-genomicranges
r-ggplot2
r-ggrepel
r-gplots
r-greylistchip
r-iranges
r-limma
r-locfit
r-rcolorbrewer
r-rcpp
r-rhtslib
r-rsamtools
r-s4vectors
r-summarizedexperiment
r-systempiper
make
)
optdepends=(
r-biocstyle
r-bsgenome
r-csaw
r-edger
r-genomeinfodb
r-grid
r-profileplyr
r-rgl
r-rtracklayer
r-testthat
r-xlconnect
r-xtable
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('193fb53ce4ec9080a2ddaa88a468d2caad7ddbc07ed4d48df407931cd967bd0c')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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