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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=diffcyt
_pkgver=1.26.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Differential discovery in high-dimensional cytometry via high-resolution clustering"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-circlize
r-complexheatmap
r-dplyr
r-edger
r-flowcore
r-flowsom
r-limma
r-lme4
r-magrittr
r-multcomp
r-reshape2
r-s4vectors
r-summarizedexperiment
r-tidyr
)
optdepends=(
r-biocstyle
r-catalyst
r-hdcytodata
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('411511b7442710c5daa4e96c21f582e1')
b2sums=('541a3d2002eb2e34640438b07b4b06a88c6250350cb0ef18aa9cd2203db895e36027f921d3826d440881cf5ffa60ba3d0dc6477b44877f6a734ceb4f57766257')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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