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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=diffcyt
_pkgver=1.18.0
pkgname=r-${_pkgname,,}
pkgver=1.18.0
pkgrel=1
pkgdesc='Differential discovery in high-dimensional cytometry via high-resolution clustering'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-circlize
r-complexheatmap
r-dplyr
r-edger
r-flowcore
r-flowsom
r-limma
r-lme4
r-magrittr
r-multcomp
r-reshape2
r-s4vectors
r-summarizedexperiment
r-tidyr
)
optdepends=(
r-biocstyle
r-catalyst
r-hdcytodata
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('5a30682f27f04a73884712cf9f94a9fe7524f2aadc99e0290c95586bf5dcb083')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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