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# system requirements: C++11, GNU make
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=diffHic
_pkgver=1.40.0
pkgname=r-${_pkgname,,}
pkgver=1.40.0
pkgrel=1
pkgdesc='Differential Analyis of Hi-C Data'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biocgenerics
r-biostrings
r-bsgenome
r-csaw
r-edger
r-genomeinfodb
r-genomicranges
r-interactionset
r-iranges
r-limma
r-locfit
r-rcpp
r-rhdf5
r-rhtslib
r-rsamtools
r-rtracklayer
r-s4vectors
r-summarizedexperiment
r-zlibbioc
gcc
make
)
optdepends=(
r-bsgenome.ecoli.ncbi.20080805
r-matrix
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('c688808cce4bf9c094d3d1914b95ab98477b71720d91dd1ff969f6c6d5a15679')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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