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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=diffloop
_pkgver=1.24.0
pkgname=r-${_pkgname,,}
pkgver=1.24.0
pkgrel=4
pkgdesc='Identifying differential DNA loops from chromatin topology data'
arch=('any')
url="https://bioconductor.org/packages/3.15/${_pkgname}"
license=('MIT')
depends=(
r
r-biobase
r-biomart
r-data.table
r-dplyr
r-edger
r-foreach
r-genomeinfodb
r-genomicranges
r-ggplot2
r-iranges
r-limma
r-locfit
r-matrixstats
r-pbapply
r-plyr
r-readr
r-reshape2
r-rtracklayer
r-s4vectors
r-statmod
r-sushi
)
optdepends=(
r-deseq2
r-diffloopdata
r-ggrepel
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('2f48de52b10b9b59bf31ca50f189939c3c155e14a852d1cb39fc77047c7a126c')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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