blob: 2b630b6ae5b63152a8738748e2d6035cd306963b (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=diffuStats
_pkgver=1.24.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Diffusion scores on biological networks"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
onetbb
r-checkmate
r-expm
r-igraph
r-plyr
r-precrec
r-rcpp
r-rcpparmadillo
r-rcppparallel
)
checkdepends=(
r-reshape2
r-testthat
)
optdepends=(
r-biocstyle
r-ggplot2
r-ggsci
r-igraphdata
r-knitr
r-reshape2
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('7acb79b4e235d46ccdd561c0d17f54b6')
b2sums=('fbfa3b4fa0722fb30e7edafac3c241fb0e446de2115f79acb9c89f09f83cc1e0852cd145bcb923a7322d97180c07fce30af56294f92bd86254874310bb038384')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|