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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=diffuStats
_pkgver=1.22.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=3
pkgdesc="Diffusion scores on biological networks"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
onetbb
r-checkmate
r-expm
r-igraph
r-plyr
r-precrec
r-rcpp
r-rcpparmadillo
r-rcppparallel
)
checkdepends=(
r-reshape2
r-testthat
)
optdepends=(
r-biocstyle
r-ggplot2
r-ggsci
r-igraphdata
r-knitr
r-reshape2
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('7c47ae0431034f3de807ad1fa3684530')
b2sums=('1e184621fd58891acbeb07c41cbb2ced11394db6aaa1d4133b57faf10bb84ab639fb1b99da8de4d01b58c7285feff1847a0a4c40250b86103c8851ed120ce754')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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