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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=dmrseq
_pkgver=1.24.2
pkgname=r-${_pkgname,,}
pkgver=1.24.2
pkgrel=1
pkgdesc='Detection and inference of differentially methylated regions from Whole Genome Bisulfite Sequencing'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-annotationhub
r-annotatr
r-biocparallel
r-bsseq
r-bumphunter
r-delayedmatrixstats
r-genomeinfodb
r-genomicranges
r-ggplot2
r-iranges
r-locfit
r-matrixstats
r-outliers
r-rcolorbrewer
r-rtracklayer
r-s4vectors
)
optdepends=(
r-biocstyle
r-knitr
r-org.hs.eg.db
r-rmarkdown
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('2cb67ea1b852ed0f0d21ed1cb8ed00ed9903677bbd4b5409003ee0d35ca5ad3b')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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