blob: 0ca7b98dfb8bce8fa1744ed91e8a5c03b958dd74 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=EpiTxDb
_pkgver=1.10.0
pkgname=r-${_pkgname,,}
pkgver=1.10.0
pkgrel=1
pkgdesc='Storing and accessing epitranscriptomic information using the AnnotationDbi interface'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-annotationdbi
r-biocfilecache
r-biocgenerics
r-biostrings
r-curl
r-dbi
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-httr
r-iranges
r-modstrings
r-rsqlite
r-s4vectors
r-trnadbimport
r-xml2
)
optdepends=(
r-annotationhub
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg38
r-bsgenome.scerevisiae.ucsc.saccer3
r-ensembldb
r-epitxdb.hs.hg38
r-ggplot2
r-httptest
r-knitr
r-rmarkdown
r-testthat
r-txdb.hsapiens.ucsc.hg38.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('a55f7333ae84cad2d57488b270b66f38b70ac57000bd619356ad475b8eb55a94')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|