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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=EpiTxDb
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=1.8.0
pkgrel=1
pkgdesc='Storing and accessing epitranscriptomic information using the AnnotationDbi interface'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-annotationdbi
r-biocfilecache
r-biocgenerics
r-biostrings
r-curl
r-dbi
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-httr
r-iranges
r-modstrings
r-rsqlite
r-s4vectors
r-trnadbimport
r-xml2
)
optdepends=(
r-annotationhub
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg38
r-bsgenome.scerevisiae.ucsc.saccer3
r-ensembldb
r-epitxdb.hs.hg38
r-ggplot2
r-httptest
r-knitr
r-rmarkdown
r-testthat
r-txdb.hsapiens.ucsc.hg38.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ba5d8e8740888be2aede2b5457b23997c0d19776189edf8e80e1ca23031caa8b')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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