blob: 5101640a9f3787e356cc0c1767eb90fee0743707 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
|
# system requirements: C++11
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=fgsea
_pkgver=1.26.0
pkgname=r-${_pkgname,,}
pkgver=1.26.0
pkgrel=3
pkgdesc='Fast Gene Set Enrichment Analysis'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
gcc
r
r-bh
r-biocparallel
r-cowplot
r-data.table
r-fastmatch
r-ggplot2
r-rcpp
r-scales
)
optdepends=(
r-aggregation
r-annotationdbi
r-geoquery
r-knitr
r-limma
r-msigdbr
r-org.mm.eg.db
r-parallel
r-reactome.db
r-rmarkdown
r-seurat
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ffd44dcf4e4a757ae4c79f3df99897a3e126fbca3e54457ace2c8cc923cf1632')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENCE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
|