summarylogtreecommitdiffstats
path: root/PKGBUILD
blob: e0c911285d0518814a62bf25998f7cf7c7e0d767 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=gage
_pkgver=2.54.0
pkgname=r-${_pkgname,,}
pkgver=2.54.0
pkgrel=1
pkgdesc='Generally Applicable Gene-set Enrichment for Pathway Analysis'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
  r
  r-annotationdbi
  r-go.db
  r-graph
  r-keggrest
)
optdepends=(
  r-deseq2
  r-edger
  r-gagedata
  r-genomicalignments
  r-gseabase
  r-hgu133a.db
  r-limma
  r-org.hs.eg.db
  r-pathview
  r-rsamtools
  r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('d84fa0c0b783fa7529b45ec0c0b03a93dea301f84c6199151aca825e7cda8d47')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: