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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=gDR
_pkgver=1.0.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=3
pkgdesc="Umbrella package for R packages in the gDR suite"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-gdrcore
r-gdrimport
r-gdrutils
)
checkdepends=(
r-gdrtestdata
r-testthat
)
optdepends=(
r-biocstyle
r-bumpymatrix
r-futile.logger
r-gdrstyle
r-gdrtestdata
r-kableextra
r-knitr
r-markdown
r-purrr
r-rmarkdown
r-summarizedexperiment
r-testthat
r-yaml
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('abefb906e5c9ec014a443b0367844ac9')
b2sums=('8935d38e130675b1193a22b4630614640749e1b188209b96070c000e124b5da15b2eb94d0f113573d39046d266cf28443d08d1996939da3007cf6676db5da45a')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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